PhD Student in Computational Biology and Systems Immunology | Naturwissenschaftliche*n Doktorand*in mit Schwerpunkt Computational Biology (m/w/d)
Uniklinikum Freiburg
Job Summary
This position is for a highly motivated PhD student focusing on Computational Biology, Bioinformatics, and Systems Immunology within the Department of Internal Medicine I at the University Hospital Freiburg. The core research involves investigating the cellular and molecular mechanisms of immune escape in Acute Myeloid Leukemia (AML). The successful candidate will analyze and integrate large-scale single-cell and spatial datasets (including CITE-seq, HDcyto, Spatial Transcriptomics, and CODEX) using advanced bioinformatic methods, such as probabilistic and Deep Learning models. Daily tasks include identifying cell communication networks and transcriptional programs that promote immune evasion, collaborating with experimental partners for biological validation, and ultimately completing a scientific dissertation in Computational Immunology. This role offers excellent development opportunities, integration into the 'OncoEscape' Research Training Group, and access to High-Performance Computing resources, making it an attractive opportunity for translational research focused on immuno-oncology.
Required Skills
Education
Master's degree in Bioinformatics, Systems Biology, Computational Biology, or related field
Experience
- Experience in the analysis of single-cell or Omics data (advantageous)
- Basic knowledge of Workflow Management Systems (e.g., Snakemake) and High-Performance Computing environments (desirable)
Languages
Additional
- Temporary contract duration (initially 24 months)
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