Bioinformatician / PhD Candidate in Microbiome Systems Biology | Bioinformatiker (m/w/d)

Friedrich-Schiller-Universität Jena

Jena, Thüringen, Deutschland
Published Mar 30, 2026
Full-time
No information

Job Summary

The Microbiome Dynamics Group at the Institute of Microbiology, Friedrich Schiller University Jena, is seeking a dedicated PhD student for a high-impact research project focused on metagenomics and big data integration. In this role, you will work within the 'SynThera' project to integrate shotgun metagenomics data with genome-scale metabolic modeling. Your primary objective will be to utilize machine learning methods to propose innovative strategies for increasing the colonization potential of engineered probiotic strains in the human gut. Beyond core research, you will contribute to international collaborations, publish findings in scientific journals, and present at global conferences. This position offers a unique opportunity to work in a vibrant, internationally connected scientific environment with access to state-of-the-art computational resources and a supportive 'open-door' atmosphere. It is an ideal role for a researcher looking to make tangible contributions toward a healthier society through advanced computational biology.

Required Skills

Education

Master's degree in Computational Biology, Bioinformatics, Systems Biology, Bioengineering, Chemical Engineering, or a related discipline.

Experience

  • Professional experience in the analysis of metagenomics or biological high-throughput data
  • Experience with programming in languages such as Python, Perl, C++, or R
  • Experience applying statistical methods in the context of biological systems
  • Proven ability to work in collaborative, interdisciplinary research environments

Languages

Not specified

Additional

  • This is a part-time position (65%, 26 hours per week) limited to a duration of 4 years. The role is based in Jena, Germany, within the Microbiome Dynamics research group.